Official Title
Interest of High-throughput Sequencing of RNAs for the Diagnosis of Heterogeneous Genetic Diseases
Brief Title
Interest of High-throughput Sequencing of RNAs for the Diagnosis of Heterogeneous Genetic Diseases
Protocol ID
NCT03971292
Lead Sponsor
University Hospital, Strasbourg, France
Brief Summary
The advent of high throughput genomic DNA sequencing has led to major advances in the
diagnosis of genetic diseases of heterogeneous origin. Thus, our hospital laboratory has
developed in recent years several diagnostic tests based on the targeted sequencing of
coding sequences of gene panels (from about twenty genes for DNA repair diseases to
nearly five hundred genes for the intellectual disability). These targeted analyzes,
carried out by capture, have thus solved 25 to 80% of the cases according to the
indications, without allowing the diagnosis of the totality of the patients.
For these negative cases, the search for mutations in the coding sequences was then
extended to Whole Exome Sequencing, thus providing several additional diagnoses.
Patients still remain without diagnosis after this exome study. These could be complex
cases of genetic or even non-genetic origin, but also monogenic pathologies linked to
mutations that are not identifiable by coding sequence analyzes, and especially affecting
messenger RNAs.
Enrollment Count
15 participants
Eligibility Criteria
Inclusion criteria common to all participants:
- Patient minor or major
- Patient suffering from a pathology studied in the laboratory by high throughput
sequencing: intellectual disability, myopathies, neurosensory disease (Bardet-Biedl
syndrome, retinitis pigmentosa, ....), DNA repair diseases (Cockayne syndrome, ...)
- Sampling allowing the extraction of available RNA (or RNA available in the bank)
- Patient (or its legal representative) having already given their consent, on the one
hand for carrying out genetic analyzes to determine the cause of their disease, and
on the other hand for the conservation of part of their non used for further use in
order to continue diagnostic investigations in the light of evolving knowledge and
for research purposes.
- Patient (or its legal representative) agreeing to use data from his medical file and
those associated with genetic diagnosis for research purposes
- Patient affiliated to a social security scheme Inclusion criteria for the test phase
- Pertogenous mutation (s) known Inclusion criteria for the prospective phase
- Magnetic molecular diagnosis, after the usual investigations (high-throughput
sequencing of a panel of genes on genomic DNA, sequencing of exome, or even genome.
Non-inclusion criteria:
◾ Refusal of the patient (or his / her legal representative) to participate in the study.
Filters
DNA Sequencing
Diagnosis of Genetic Diseases of Heterogeneous Origin
UNKNOWN
CHILD
ADULT
OLDER_ADULT